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We had a similar issue and after some review decided to upgrade to 10.0.6 which solved the problem. Well as least we are 6 days without this issue.
We noticed schedules stopping without warning. They show up "Completed" in the queue with a Status showing "Corrupt: Mongo db.....". See the attached snapshot for the actual message.
We had this issue using 11.0.4 impacting about many workflows. We manually started the these in 10.0.6. No other modifications were done.
We have implemented a workflow that refreshes a Tableau Dashboard alerting us if this happens again. If you want to create an alert the "Alteryx Server Scheduler Macro" is a simple way to read scheduler logs. Look for the word "Corrupt" in the field Status.
I know of at least two other companies having this same issue.