@Venkatesh23 Currently, I don't think there's a way supported way to disable a workflow using the command prompt.
Hi @Venkatesh23 ,
You can disable the run command tool in the Designer of the worker node.
Goto Program File > Alteryx > bin > RuntimeData
Modify the DefaultSetting.XML
Add the following within the <DeprecatedNodes>
<Node MergeId="AlteryxBasePluginsGui.RunCommand.RunCommand" IsDeprecated="False" IsSuppressed="True" />
Then, the run command tool will be disabled in the designer of the worker node.
However, this modification will not be supported by Alteryx Support officially.
Best Regards,
Samuel