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We have run into the same issue. Using a text box to update a directory tool. The flow works on Designer, through the Server UI, but for some reason when queued by the API it fails and is not able to access the folder. We generally run all of our flows from Alteryx as admin so that folder access is not restricted. Does anyone know if the API has a separate flag to run as admin? The workflow is set to always run as admin on default.