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I have tried to reproduce this error a number of times, but sadly couldn't manage it. After a number of tries I went on to check the comments to see if anyone else managed but in the process I saw some of the responses... So I waited a while to try and forget what I saw but couldn't. Today I decided to look through community and see if there are any resources I could base my solution on, and I did! It wasn't exactly the same issue but the memory allocation issue was present (https://community.alteryx.com/t5/Alteryx-Designer/Cluster-Analysis-Customer-R-tool-Errors-out/td-p/3...) so I decided to suggest a solution of splitting data into chunks for appending the clusters and mocked up a short example below (didn't bother to make an actual batch macro though...)