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I am linking two inputs to a standard macro. One input matches the field mapping but the other doesn't give me the option to select the correct fields so I get this error "All Fields Must Be Mapped For the Input:..".
I saw this error occur when I edited a formula tool within a macro. I saved my work and closed the macro. Then I went back into the normal workflow where the macro lived and clicked run only to receive the error you did above.
I personally think this is an Alteryx Bug because the solve for me was to click the macro and then click outside of the macro to help it correctly map all fields.