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Making a copy of a workflow that contains a Python tool will cause the JupyterGuidDir to be duplicated. Because of this reason, both copies will point to the same Jupyter Notebook document. If the user makes changes on one copy, the other will be changed too which is not desirable.
When publishing a workflow to Gallery or Scheduler (Designer + Desktop Automation) or when packaging a workflow for export, checking the boxes for what to include and what to exclude seems to work inconsistently as of Designer 2020.2. Here is a workaround to cover you until the issue is resolved in a future release.
While trying to connect to Snowflake from Alteryx Designer, using Input Data tool, the following error is thrown after running the workflow:
Error: Input Data (1): Error SQLExecute: No active warehouse selected in the current session. Select an active warehouse with the 'use warehouse' command.