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without seeing your data or your workflow this will be difficult, however, can you first use a browse tool and check your input data? This is due to the fact that the input tool only gives you a preview of the data and not the full data set.
I get back results saying that I've reached my memory limit so Alteryx is only showing the 4000 results instead. Using the browse tool, I am able to view all 8000+ records; however, I want also have all records once they are exported.
When there is not enough memory, AYX will start to write temp files to the disk that will get deleted afterwards.
If you have a big dataset, don't expect to see all the records in the Results window. This one will give you only a preview of the data.
However, any operation you are doing will apply on the entire dataset. This includes outputting data.. as soon as you pick the Output tool, you will see that you are able to output everything.
The Browse is the tool you can use if you want to see the full dataset for WF development purposes - Since it will pull everything in memory, it's not recommended to keep it in production ready workflow so you can have better process time experience. Hope this helps. Cheers!