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In Alteryx, create and run a batch file that will move the daily file to the 'Done' folder using CLI commands.
There is a great three part series on the Community on batch files. I highly recommend you check it out. You can also check out this article, which deals with creating a batch file using CLI commands to read in a list of objects in a bucket. It should be fairly easy to modify it to move files instead.
Dan Chapman Program Manager, Customer Support New to the community? Get started here.