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At this time, Alteryx can only pull Sharepoint lists and not files. This is not advisable from an Alteryx standpoint as you would have to fins a way to store those files somewhere where Alteryx could get to them.
We do have OneDrive connectors available (see here and here for more details) which will make this possible for you.
There's also a way of mapping Sharepoint so that your system recognises the location as a network directory that some of our customers use (see the article here). This is however dependent on your deployment of Sharepoint and may not be available in your case.