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You can make use of Block Until Done transformation. At the first level you can have all your workflow that needs to be done. In the second level you can have the sql stored procedure executed via Output Tool as @KaneG has suggested.
Hello @vkarthik21, Thanks for sharing this. But this doesn't really solve the issue. I am pulling data from multiple sources and have multiple Input shapes. What you proposed will only wait for one of the Input shape to complete.