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When the sync process start to create assets in Connect, it uses the same "stage" table for all 3 main objects in hierarchy,
Tableau server, sites and projects. Its STD_XFORMS.TBL_PROJECTS. So while having server and sites the projects should be there too. Worth to try to observe any errors in connect_catalina log and also designer log while running loader.
I would also make sure that there not any version discrepancies (Connect, Tableau loader and Designer who is executing the loader) btw what version you have?
and FYI this is my content of TBL_PROJECTS..
While we have enought data to beggin, I suggest to open support ticket, and we can help.
I see discrepancies in version. They might cause problems.
Please use the same version for designer(server), Connect, and loaders.
The loader version is not clear from your description. The version you can observe, if you install Connect laoders exe, and go in designer to help / sample workflows / Alteryx Connect metadata loaders / Tableua Loader Each loader has the version displayed on canvas or in interdace window.
If the fixing of the versions does not help, please log the support ticket and provide desigler log from loader run and also the connect catalina log.
This should be good start for the case resolution.